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dodo: Extinction Models in R

dodo.Rd

dodo implements a selection of published extinction models.

Model Functions

  • SL88F1() Springer & Lilje's (1988) "Broken Stick" model.

  • SS89F1() Strauss & Sadler's (1989) "Classical" model.

  • SS89B1() Strauss & Sadler's (1989) "Bayesian" model.

  • SO93F1() Solow's (1993) "Classical" model.

  • SO93B1() Solow's (1993) "Bayesian" model.

  • SO93F2() Solow's (1993) "Declining" model.

  • MA94F1() Marshall's (1994) "Distribution-free" model.

  • BU95F1() Burgman et al.'s (1995) "Discrete-time" model.

  • BU95F2() Burgman et al.'s (1995) "Runs Test" model.

  • BU95F3() Burgman et al.'s (1995) "Empty Cells" model.

  • MA97F1() Marshall's (1997) "Non-random" model.

  • MC98F1() McCarthy's (1998) "Partial Solow" model.

  • MC99F1() McFarlane's (1999) "Median Gap" model.

  • WM99B1() Weiss & Marshall's (1999) "Discrete-time" model.

  • RS03F1() Roberts & Solow's (2003) "Optimal Linear Estimation" model.

  • SR03F1() Solow & Roberts' (2003) "Non-parametric" model.

  • MC06F1() McInerny et al.'s (2006) "Sighting Rate" model.

  • RO09B1() Rout et al.'s (2009) "Declining" model.

  • JE10F1() Jarić & Ebenhard's (2010) "Stationary" model.

  • JE10F2() Jarić & Ebenhard's (2010) "Non-stationary" model.

  • BR12F1() Bradshaw et al.'s (2012) "Inverse-weighted McInerny" model.

  • SO12B1() Solow et al.'s (2012) "Uncertain" model.

  • TH13B1() Thompson et al.'s (2013) "Deterministic" model.

  • TH13B2() Thompson et al.'s (2013) "Quenched" model.

  • TH13B3() Thompson et al.'s (2013) "Annealed" model.

  • AL14B1() Alroy's (2015) "Creeping Shadow of a Doubt" model.

  • CB14B1() Caley & Barry's (2014) "Constant" model.

  • CB14B2() Caley & Barry's (2014) "Non-constant" model.

  • JR14F1() Jarić & Roberts' (2014) "Solow" model.

  • LE14B1() Lee's (2014) "Simple" model.

  • LE14B2() Lee et al.'s (2014) "Variable Reliability" model.

  • SB14B1() Solow & Beet's (2014) "Model 1" model.

  • SB14B2() Solow & Beet's (2014) "Model 2" model.

  • AL15B1() Alroy's (2015) "Agnostic" model.

  • SO16B1() Solow's (2016) "Retrospective" model.

  • SO16B2() Solow's (2016) "Sequential" model.

  • WA16B1() Wang et al.'s (2016) "Adaptive" model.

  • TH17I1() Thompson et al.'s (2017) "Iterative" model.

  • BR19F1() Brook et al.'s (2019) "Solow" model.

  • BR19F2() Brook et al.'s (2019) "Solow & Roberts" model.

  • BR19F3() Brook et al.'s (2019) "Roberts & Solow" model.

  • BR19F4() Brook et al.'s (2019) "McInerny" model.

  • BR19F5() Brook et al.'s (2019) "Last Appearance Date" model.

  • TH19B1() Thompson et al.'s (2017) "Bayesian Updating" model.

  • KO20B1() Kodikara et al.'s (2020) "Certain-only" model.

  • KO20B2() Kodikara et al.'s (2020) "Uncertain" model.

  • KO21B1() Kodikara et al.'s (2021) "Change-point" model.

Other Functions

  • convert_dodo() Convert basic sightings spreadsheet into all dodo formats.

See also

Useful links:

Author

Maintainer: Louis Backstrom ljb38@st-andrews.ac.uk